Unlock the Full Potential of Your Omics Data

Acquiring and analysing multiple omics datasets is now common practice, even in labs without a strong bioinformatics background.
However, integrating and managing large, multidimensional datasets remains a challenge, often leading to underutilised data and missed discoveries.


Why Use Our Interface?

🔹 Seamless Data Integration – Combine datasets from multiple omics layers to uncover hidden biological insights.
🔹 Custom Gene Sets – Define key genes from clinical or functional data and apply them across experiments.
🔹 Comparative Analysis – Identify trends and reproducibility by comparing numerical scores across datasets.
🔹 Clinical Relevance Exploration – Evaluate genes in patient cohorts to assess therapeutic significance.
🔹 Interactive Visualisations & Quick Analysis – Adjust thresholds, filter data, and perform GO analysis or GSEA—no coding required.
🔹 Our platform also functions as a centralised database, ensuring stress-free access to your datasets at any time.


Installing OmicsDBridge to your local PC

The source code and installation guide is available at this github page.
Please note that the data you upload to this website will be deleted once you leave the session. Please install and set up OmicsBridge to your local PC to use the full power of our interface.



Make your data work for you. Start uncovering meaningful biological connections today.

Database and Data Upload

List of the datasets


                        

                      

                    

                  

                

                

                  

                    

                      
Data upload

                      

                        
                      

                    

                    

                      

                        

                          

                            1. Upload a file
                          

                        

                        

                          

                            
                            

                              
                              
                            

                            

                              

                            

                          

                        

                        

                          

                            

                              
                                Please upload the corresponding .bai file as well.
                              
                              

                                
                                

                                  
                                  
                                

                                

                                  

                                

                              

                            

                          

                        

                        

                          

                            

                          

                        

                        

                          

                        

                        

                          

                            
                          

                        

                      

                      

                        

                          

                            2. Fill in the dataset information
                          

                        

                        

                          

                            
                            
                          

                        

                        

                          

                            
                            
                          

                        

                        

                          

                            
                            
                          

                        

                        

                          

                            

                              

                            

                            

                              

                            

                          

                        

                        

                          

                            
                            
                          

                        

                        

                          

                            
                            
                          

                        

                      

                      

                        

                          

                            
                            

                              
                              
                            

                          

                        

                        

                          

                            

                              
                              
                            

                          

                          

                            

                              
                              
                            

                          

                        

                        

                          

                            

                          

                          

                            

                              
In case of uoloading a count data, please make sure that the columns are set to "SampleName_Rep#". See wiki for more information
                            

                          

                        

                      

                      

                        

                          

                            
                            
                          

                        

                      

                      

                        

                          

                        

                        

                          

                            3. Click the button below
                          

                        

                        

                          
                        

                        

                          

                        

                      

                      

                        

                          

                        

                        

                          
Preview:

                        

                        

                          

                        

                        

                          

                        

                      

                    

                  

                

              

              

                
 Data Overview

                

                  

                    

                      

                        Dataset Selection
                      

                      

                        
                      

                    

                    

                      

                        

                          

                            

                              

                            

                            

                              

                                
                              

                            

                          

                        

                        

                          

                            

                              

                                Dataset detail:
                              

                            

                            

                              
                            

                          

                        

                      

                    

                  

                

                

                  

                    

                      

                        Overview and Analysis
                      

                    

                    

                      

                        

                      

                      

                        

                          
                          

                            

                              

                              

                                

                                  

                                    

                                      Data table
                                    

                                    

                                      
                                    

                                  

                                  

                                    
                                  

                                

                              

                            

                            

                              

                              

                                

                                  

                                    

                                      

                                        

                                          Inputs
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                              
                                              
                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                            

                                          

                                          

                                            

                                          

                                          

                                            

                                          

                                          

                                            
Choose gene(s) from the table blow:

                                          

                                          

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          Expression scores
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                          

                                          

                                            

                                          

                                          

                                            
                                              
                                              Download this table
                                            
                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          Swarm Plot
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                          

                                          

                                            
                                          

                                          

                                            
                                          

                                          

                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                  

                                                

                                                

                                                  

                                                

                                                

                                                  
List of the available group names

                                                

                                                

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                  

                                                

                                                

                                                  

                                                

                                                

                                                  

                                                    List of sample names ▼ (click here)
                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                            

                              

                              

                                

                                  

                                    

                                      

                                        

                                          Inputs and Settings
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                              
                                              

                                                

                                                  
                                                

                                                

                                                  
                                                

                                                

                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                            

                                          

                                          

                                            

                                              
                                              

                                                

                                                  
                                                

                                                

                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                          

                                          

                                            

                                              
                                            

                                            

                                              

                                            

                                            

                                              
Choose a row from below:

                                            

                                          

                                          

                                            

                                              
                                            

                                            

                                              

                                            

                                          

                                          

                                            

                                              

                                            

                                            

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          Plot
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                          

                                          

                                            

                                          

                                          

                                            

                                          

                                          

                                            

                                          

                                          

                                            
                                          

                                        

                                        

                                          

                                            
                                          

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                
List of the sample names

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                            

                              

                              

                                

                                  

                                    

                                      

                                        

                                          Inputs and Settings
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                              
                                              

                                                

                                                  
                                                

                                                

                                                  
                                                

                                                

                                                  
                                                

                                                

                                                  
                                                

                                                

                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  

                                                    
                                                    
                                                  

                                                  

                                                    

                                                  

                                                

                                              

                                            

                                            

                                              

                                            

                                          

                                          

                                            

                                          

                                          

                                            
Choose the samples to use below:

                                          

                                          

                                            

                                          

                                          

                                            

                                          

                                          

                                            

                                          

                                          

                                            
                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          Plot
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                          

                                          

                                            
                                          

                                          

                                            

                                          

                                          

                                            
                                          

                                          

                                            

                                          

                                          

                                            

                                              
                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        

                                          Expression scores
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                          

                                          

                                            

                                          

                                        

                                        

                                          

                                            
                                              
                                              Download this table
                                            
                                          

                                          

                                            

                                              

                                                

                                                  
List of the genes in each cluster.

                                                  

                                                    
                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                    

                                                  

                                                  

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                            

                              

                              

                                

                                  

                                    

                                      

                                        

                                          Plot
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                          

                                          

                                            
                                          

                                          

                                            
                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          Settings
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                              
                                              

                                                

                                                  
                                                

                                                

                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                            Please specify the sample names and their group names that you want to use as the following example.

                                            Ex.)

                                            	Sample1_rep1,Group1

                                            	Sample1_rep2,Group1

                                            	Sample2_rep1,Group2

                                            	...

                                          
                                                

                                                

                                                  

                                                    
                                                    
                                                  

                                                

                                                

                                                  

                                                    List of sample names ▼ (click here)
                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                              

                                            

                                          

                                          

                                            
                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                      

                        

                          
                          

                            

                              

                              

                                

                                  

                                    

                                      Data table
                                    

                                    

                                      
                                    

                                  

                                  

                                    
                                  

                                

                              

                            

                            

                              

                                

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        

                                          
Main plot

                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          
                                          

                                            

                                              

                                                

                                                  

                                                

                                                

                                                  

                                                

                                                

                                                  
                                                

                                                

                                                  

                                                

                                                

                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                

                                                

                                                  

                                                

                                                

                                                  
                                                

                                                

                                                  

                                                

                                                

                                                  
                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          Display Options
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            
Choose X and Y axis:

                                          

                                          

                                            

                                          

                                          

                                            

                                          

                                        

                                        

                                          

                                            
Highlight the genes of interest

                                          

                                          

                                            

                                              
                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  

                                                    
                                                    
                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                        
                                                        
                                                      

                                                    

                                                  

                                                

                                                

                                                  

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                          

                                            

                                              

                                                
                                                
                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          Highlight filterd genes or gene sets in the plot
                                        

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                              
                                              

                                                
                                                
                                                
                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  
                                                  

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  
                                                  

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                              

                                              

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                    

                                                      
                                                      

                                                        
                                                        
                                                      

                                                      

                                                        

                                                      

                                                    

                                                  

                                                

                                                

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                
Further filtering:

                                              

                                              

                                                

                                                  

                                                    

                                                      

                                                        

                                                          
                                                          
                                                        

                                                      

                                                      

                                                        

                                                          
                                                          
                                                        

                                                      

                                                    

                                                  

                                                  

                                                    

                                                      

                                                        

                                                          
                                                          
                                                        

                                                      

                                                      

                                                        

                                                          
                                                          
                                                        

                                                      

                                                    

                                                  

                                                  

                                                    

                                                      
                                                      

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                      

                                                    

                                                  

                                                  

                                                    

                                                      
                                                      

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                        

                                                          
                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                          

                                          

                                            

                                              
Further filtering:

                                            

                                            

                                              

                                                

                                                  

                                                    

                                                      

                                                        
                                                        
                                                      

                                                    

                                                    

                                                      

                                                        
                                                        
                                                      

                                                    

                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                        
                                                        
                                                      

                                                    

                                                    

                                                      

                                                        
                                                        
                                                      

                                                    

                                                  

                                                

                                                

                                                  

                                                    
                                                    

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                    

                                                  

                                                

                                                

                                                  

                                                    
                                                    

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        

                                          
Information of genes of interest

                                          

                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                          

                                          

                                            

                                              
                                            

                                          

                                          

                                            

                                              
                                                
                                                Download this table
                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
Outliers Information

                                          

                                            
                                          

                                        

                                        

                                          
                                          

                                            

                                              
                                                
                                                Download this table
                                              
                                            

                                            

                                              

                                                

                                                  

                                                    
List of the genes

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
Pathway Genes Information

                                          

                                            
                                          

                                        

                                        

                                          
                                          

                                            

                                              
                                                
                                                Download this table
                                              
                                            

                                            

                                              

                                                

                                                  

                                                    
List of the genes

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
Custom Gene Sets Information

                                          

                                            
                                          

                                        

                                        

                                          
                                          

                                            

                                              
                                                
                                                Download this table
                                              
                                            

                                            

                                              

                                                

                                                  

                                                    
List of the genes

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        
Selected Area Information

                                        

                                          
                                        

                                      

                                      

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            
                                              
                                              Download this table
                                            
                                          

                                          

                                            

                                              

                                                

                                                  
List of the genes

                                                  

                                                    
                                                  

                                                

                                                

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        
Downstream analysis

                                        

                                          
                                        

                                      

                                      

                                        

                                          
                                          

                                            

                                              

                                                

                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      Settings
                                                    

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                      

                                                        

                                                          
                                                          

                                                            

                                                              
                                                            

                                                            

                                                              
                                                            

                                                            

                                                              
                                                            

                                                          

                                                        

                                                      

                                                      

                                                        

                                                          

                                                            
                                                            
                                                          

                                                        

                                                      

                                                      

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        

                                                          
                                                          

                                                            

                                                              
                                                            

                                                            

                                                              
                                                            

                                                          

                                                        

                                                      

                                                      

                                                        

                                                          
                                                          

                                                            

                                                              
                                                            

                                                            

                                                              
                                                            

                                                          

                                                        

                                                      

                                                      

                                                        

                                                          

                                                            
                                                            

                                                              

                                                                
                                                              

                                                              

                                                                
                                                              

                                                              

                                                                
                                                              

                                                            

                                                          

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        
                                                      

                                                    

                                                    

                                                      

                                                        

                                                          This takes 1~3 minutes depending on the size of the input. Please be patient.
                                                        

                                                      

                                                      

                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      Results & Plots
                                                    

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                      

                                                        

                                                      

                                                      

                                                        

                                                      

                                                      

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        

                                                          
                                                          

                                                            
                                                            

                                                              

                                                                

                                                                  

                                                                

                                                                

                                                                  

                                                                

                                                                

                                                                  
                                                                

                                                                

                                                                  
                                                                

                                                              

                                                            

                                                            

                                                              

                                                                

                                                                  

                                                                

                                                                

                                                                  

                                                                

                                                                

                                                                  
                                                                

                                                                

                                                                  
                                                                

                                                              

                                                            

                                                            

                                                              

                                                                

                                                                  

                                                                

                                                                

                                                                  

                                                                

                                                                

                                                                  
                                                                

                                                                

                                                                  
                                                                

                                                              

                                                            

                                                          

                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                            

                                              

                                              

                                                

                                                  

                                                    

                                                      Settings
                                                    

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                      

                                                        

                                                          

                                                            

                                                              
                                                              

                                                                

                                                                  
                                                                

                                                                

                                                                  
                                                                

                                                                

                                                                  
                                                                

                                                                

                                                                  
                                                                

                                                              

                                                            

                                                          

                                                          

                                                            

                                                          

                                                          

                                                            

                                                              

                                                                
                                                                

                                                                  
                                                                  
                                                                

                                                                

                                                                  

                                                                

                                                              

                                                            

                                                          

                                                          

                                                            

                                                              

                                                                

                                                                  

                                                                    
                                                                    

                                                                      

                                                                        
                                                                      

                                                                      

                                                                        
                                                                      

                                                                    

                                                                  

                                                                

                                                                

                                                                  

                                                                    

                                                                  

                                                                

                                                                

                                                                  

                                                                    

                                                                      
                                                                      
                                                                    

                                                                  

                                                                

                                                              

                                                            

                                                          

                                                        

                                                        

                                                          

                                                            
                                                          

                                                          

                                                            

                                                          

                                                          

                                                            

                                                          

                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      GSEA results table
                                                    

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                      

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        
                                                      

                                                    

                                                    

                                                      

                                                        
                                                          
                                                          Download this table
                                                        
                                                      

                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      Plots
                                                    

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                      

                                                        

                                                      

                                                      

                                                        

                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                    

                                                  

                                                

                                              

                                            

                                            

                                              

                                              

                                                

                                                  
Available only for RNAseq DEG data processed from DESeq2

                                                

                                                

                                                  

                                                    

                                                      

                                                        
Settings

                                                        

                                                          
                                                        

                                                      

                                                      

                                                        

                                                        

                                                          

                                                            

                                                              
                                                              
                                                            

                                                          

                                                        

                                                        

                                                        

                                                          

                                                            
                                                          

                                                        

                                                      

                                                    

                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                        
Plots & Resutls

                                                        

                                                          
                                                        

                                                      

                                                      

                                                        

                                                          

                                                            Note: This is only applicable to the RANseq DEG data processed by DESeq2. Please see the wiki for more details.
                                                          

                                                          

                                                            

                                                          

                                                        

                                                        

                                                          
                                                          

                                                            

                                                              

                                                                

                                                                  

                                                                

                                                                

                                                                  

                                                                

                                                                

                                                                  
                                                                

                                                                

                                                                  
                                                                

                                                              

                                                            

                                                            
                                                          

                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

              

              

                
 Custom Genesets Information

                

                  

                    

                      

                        Custom Gene Sets
                      

                      

                        
                      

                    

                    

                      

                        

                          

                        

                        

                          
                        

                        

                          
                        

                        

                          

                        

                      

                    

                  

                

                

                  

                    

                      

                        Add a Gene Set
                      

                      

                        
                      

                    

                    

                      

                      

                        

                          

                            
                            
                          

                        

                        

                          

                            
                            
                          

                        

                        

                          

                            
                            
                          

                        

                        

                          

                            
                          

                        

                      

                      

                        

                          

                            
                            
                          

                        

                        

                          

                            
                            
                          

                        

                      

                      

                        

                          
                        

                        

                          

                        

                      

                    

                  

                

              

              

                
 Compare across datasets

                

                  

                    

                      

                        Dataset selection
                      

                      

                        
                      

                    

                    

                      

                        

                          

                        

                      

                      

                        

                          
Setect the datasets to compare below:

                        

                        

                          

                        

                        

                          

                        

                        

                          

                        

                        

                          

                            

                              

                            

                          

                        

                        

                          

                            
                          

                        

                      

                    

                  

                

                

                  

                    

                      

                        Anlaysis
                      

                    

                    

                      

                      

                        
                        

                          

                            

                              

                                

                                  

                                    

                                      

                                        Settings and Inputs
                                      

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          Please select the score for ranking (ex. LFC), choose the direction (either top or bottom), set the threshold, and click 'Investigate the Overlap'. 
A table displaying how often each gene ranks in the top or bottom X% of the selected datasets will appear below.
                                        

                                      

                                      

                                        

                                          

                                        

                                      

                                      

                                        

                                          

                                        

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        Overlapped hits
                                      

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          

                                            

                                              
                                                
                                                Download this table
                                              
                                            

                                            

                                              

                                                

                                                  

                                                    
List of the genes

                                                    

                                                      
                                                    

                                                  

                                                  

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        barplot
                                      

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    

                                      

                                        Settings and Inputs
                                      

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          Please enter genes here and choose which score you use for the y-axis and the colour of the plot. 
A bar or scatter plot comparing the score (selected as Y-axis) of each gene across the selected datasets will be generated in the end.
                                        

                                        

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              

                                            

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        Input genes
                                      

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          
Select a gene below:

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        Data information
                                      

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          
                                        

                                        

                                          
                                            
                                            Download this table
                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        Plot
                                      

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                            
                                            

                                              
                                              
                                            

                                          

                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

              

              

                
 Integrate two datasets

                

                  

                    

                      
Side by Side comparison

                      

                        
                      

                    

                    

                      

                        

                          

                            
Direction

                            

                              
                            

                          

                          

                            

                              
                              

                                

                                  
                                

                                

                                  
                                

                              

                            

                          

                        

                      

                      

                        

                          

                            
Data1

                            

                              
                            

                          

                          

                            

                              

                                

                              

                              

                                

                                  

                                    

                                  

                                  

                                    

                                  

                                  

                                    

                                      
                                    

                                  

                                

                              

                            

                            

                              

                                

                                  Please select x/y axis:
                                

                              

                            

                            

                              

                                

                              

                              

                                

                              

                              

                                

                                  

                                    

                                  

                                  

                                    

                                  

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                

                              

                            

                            

                              

                                

                              

                              

                                
                              

                              

                                
                              

                              

                                

                                  

                                    
                                  

                                

                              

                            

                          

                        

                      

                      

                        

                          

                            
Data2

                            

                              
                            

                          

                          

                            

                              

                                

                              

                              

                                

                                  

                                    

                                  

                                  

                                    

                                  

                                  

                                    

                                      
                                    

                                  

                                

                              

                            

                            

                              

                                

                                  Please select x/y axis:
                                

                              

                            

                            

                              

                                

                              

                              

                                

                              

                              

                                

                                  

                                    

                                  

                                  

                                    

                                  

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                

                              

                            

                            

                              

                                

                              

                              

                                
                              

                              

                                
                              

                              

                                

                                  

                                    
                                  

                                

                              

                            

                          

                        

                      

                      

                        

                          

                            
Overlap genes

                            

                              
                            

                          

                          

                            

                              

                                A list of genes that meet the filter settings in both datasets is displayed here.
                          
Please set the threshoolds for the data to which the selected genes are mapped.
                              

                            

                            

                              

                                

                                  
                                

                              

                            

                            

                              

                                

                              

                            

                            

                              

                                
Overlap genes table

                              

                              

                                

                              

                              

                                

                              

                            

                            

                              

                                
                                  
                                  Download this table
                                
                              

                              

                                

                                  

                                    

                                      
List of the genes

                                      

                                        
                                      

                                    

                                    

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

                

                  

                    

                      
Integration Plot

                      

                        
                      

                    

                    

                      

                        

                          

                            

                              

                                
Plot

                              

                              

                                

                                  

                                    

                                  

                                  

                                    

                                  

                                  

                                    

                                  

                                

                                

                                  

                                    

                                  

                                  

                                    
                                  

                                  

                                    
                                  

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                

                              

                            

                          

                        

                        

                          

                            

                              

                                
Display options

                                

                                  
                                

                              

                              

                                

                                  

                                    

                                      
                                      
                                    

                                  

                                

                                

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                  

                                    

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                  

                                    

                                      

                                        
                                        
                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                

                                

                                  

                                    
Filtering

                                  

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                

                                                  
                                                  

                                                    
                                                    
                                                  

                                                  

                                                    

                                                  

                                                

                                              

                                            

                                            

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
                                          
                                        

                                      

                                      

                                        

                                          
                                          
                                        

                                      

                                    

                                    

                                      

                                        

                                          
                                          

                                            

                                              
                                            

                                            

                                              
                                            

                                            

                                              
                                            

                                            

                                              
                                            

                                            

                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
                                          
                                        

                                      

                                      

                                        

                                          
                                          
                                        

                                      

                                    

                                    

                                      

                                        

                                          
                                          

                                            

                                              
                                            

                                            

                                              
                                            

                                            

                                              
                                            

                                            

                                              
                                            

                                            

                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                  

                                    

                                      

                                        
                                        
                                        
                                      

                                    

                                  

                                  

                                    

                                      

                                        
                                        
                                      

                                    

                                  

                                

                              

                            

                          

                        

                        

                          

                            

                              

                                
Filtered area

                                

                                  
                                

                              

                              

                                

                                  

                                    

                                  

                                

                                

                                  

                                    

                                  

                                

                                

                                  

                                    

                                  

                                

                                

                                  

                                    
                                      
                                      Download this table
                                    
                                  

                                  

                                    

                                      

                                        

                                          
List of the genes

                                          

                                            
                                          

                                        

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                        

                          

                            

                              

                                
Selected area

                                

                                  
                                

                              

                              

                                

                                  

                                    

                                  

                                

                                

                                  

                                    
                                      
                                      Download this table
                                    
                                  

                                  

                                    

                                      

                                        

                                          
List of the genes

                                          

                                            
                                          

                                        

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

              

              

                
 Clinical data

                

                  

                    

                      
Data selection

                    

                    

                      

                        

                          

                        

                        

                          

                            

                              
Dataset detail:

                            

                            

                              
                            

                          

                        

                      

                    

                  

                

                

                  

                    

                      
Overview and Analysis

                      

                        
                      

                    

                    

                      

                        
                        

                          

                            

                              
                              

                                

                                  

                                    

                                      

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                              
                                              

                                                

                                                  
                                                

                                                

                                                  
                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                    

                                    

                                      

                                        

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              

                                            

                                            

                                              
                                            

                                          

                                        

                                        

                                          

                                            
                                          

                                        

                                      

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                            

                              

                                

                                  

                                    

                                      
Results (Hazard Ratios)

                                    

                                    

                                      

                                        

                                          
                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          
                                            
                                            Download this table
                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plots

                                    

                                    

                                      

                                        
                                        

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                    

                                    

                                      

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                  

                                                    

                                                      

                                                        
                                                        
                                                        
                                                      

                                                    

                                                  

                                                  

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                    

                                                      
                                                      
                                                    

                                                  

                                                  

                                                    

                                                      

                                                        
                                                        
                                                        
                                                      

                                                    

                                                  

                                                  

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                            

                                            

                                              

                                            

                                            

                                              
                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                            
                                          

                                        

                                      

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                            

                              

                                

                                  

                                    

                                      
Correlation table

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          
                                            
                                            Download this table
                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Scatter plot

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                    

                                                  

                                                  

                                                    

                                                  

                                                  

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                          

                                          

                                            

                                              
                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                            
                                          

                                        

                                        

                                          

                                        

                                      

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Results (Mutation Frequency table)

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plots

                                      

                                        
                                      

                                    

                                    

                                      

                                        
                                        

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                                  
                                                  

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      
Input and Setting

                                                      

                                                        
                                                      

                                                    

                                                    

                                                      

                                                        

                                                          

                                                            

                                                              

                                                                
                                                                
                                                              

                                                            

                                                            

                                                              

                                                                

                                                                  
                                                                  
                                                                  
                                                                

                                                              

                                                            

                                                            

                                                              

                                                                

                                                              

                                                            

                                                          

                                                        

                                                        

                                                          

                                                        

                                                        

                                                          

                                                            
                                                            

                                                              

                                                                
                                                              

                                                              

                                                                
                                                              

                                                              

                                                                
                                                              

                                                              

                                                                
                                                              

                                                            

                                                          

                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      
Input genes table

                                                      

                                                        
                                                      

                                                    

                                                    

                                                      

                                                        

                                                          

                                                        

                                                        

                                                          
                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                      
Plot for Gene expression comaprison

                                                      

                                                        
                                                      

                                                    

                                                    

                                                      

                                                        

                                                      

                                                      

                                                        
                                                      

                                                      

                                                        
                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    

                                      
Input and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              

                                            

                                            

                                              

                                                Note: When there are too many subtypes, it takes longer time to visualise and the figure will be messy.
                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              
                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                            
                                          

                                        

                                      

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Test Results

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                            
                                            Download this table
                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plot

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                            
                                            

                                              
                                              
                                              
                                              
                                            

                                          

                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              
                                            

                                            

                                              

                                                Note: This takes 1~2 minutes depending on the size of the inputted genes. Please be patient.
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                          

                                        

                                        

                                          

                                        

                                      

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Results (Signature scores)

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                            
                                            Download this table
                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plots

                                    

                                    

                                      

                                        
                                        

                                          

                                            

                                            

                                              

                                                

                                              

                                              

                                                

                                                  
                                                  

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                              

                                              

                                                
                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                

                                              

                                            

                                          

                                          

                                            

                                            

                                              

                                                

                                                  

                                                    

                                                  

                                                  

                                                    

                                                  

                                                  

                                                    

                                                  

                                                  

                                                    

                                                      Note: When there are too many subtypes, it takes longer time to visualise and the figure will be messy.
                                                    

                                                  

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                                  

                                                    

                                                  

                                                  

                                                    

                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  

                                                    
                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    Deconvolution
                                  

                                  

                                    
                                  

                                

                                

                                  

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                    

                                      

                                        

                                          
Deconvolution Result table:

                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                            
                                            Download this table
                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                            

                              

                                

                                  

                                    Futher analysis
                                  

                                

                                

                                  

                                    
                                    

                                      

                                        

                                          

                                            

                                              

                                                

                                                  
Inputs and Settings

                                                  

                                                    
                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                        
                                                        

                                                          

                                                            
                                                          

                                                          

                                                            
                                                          

                                                          

                                                            
                                                          

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        

                                                      

                                                      

                                                        

                                                      

                                                      

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        

                                                          
                                                          
                                                        

                                                      

                                                    

                                                  

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                        
                                                        

                                                          

                                                            
                                                          

                                                          

                                                            
                                                          

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        

                                                      

                                                    

                                                  

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
Plot

                                                  

                                                    
                                                  

                                                

                                                

                                                  

                                                    
                                                    

                                                      

                                                        

                                                          

                                                            

                                                          

                                                          

                                                            

                                                          

                                                          

                                                            
                                                          

                                                          

                                                            
                                                          

                                                        

                                                      

                                                      

                                                        

                                                          

                                                            

                                                          

                                                          

                                                            

                                                          

                                                          

                                                            
                                                          

                                                          

                                                            

                                                              

                                                                
                                                                
                                                                
                                                              

                                                            

                                                          

                                                          

                                                            
                                                          

                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                      

                                        

                                          

                                            

                                              

                                                

                                                  
Input and Setting

                                                  

                                                    
                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                        

                                                          

                                                        

                                                        

                                                          

                                                            
                                                            
                                                          

                                                        

                                                        

                                                          

                                                            

                                                              
                                                              
                                                              
                                                            

                                                          

                                                        

                                                        

                                                          

                                                            

                                                          

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        

                                                          

                                                        

                                                        

                                                          

                                                        

                                                      

                                                    

                                                    

                                                      

                                                        

                                                          

                                                        

                                                        

                                                          

                                                            
                                                            

                                                              

                                                                
                                                              

                                                              

                                                                
                                                              

                                                            

                                                          

                                                        

                                                        

                                                          

                                                        

                                                        

                                                          
                                                        

                                                      

                                                    

                                                    

                                                      

                                                    

                                                  

                                                  

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
Correlation table

                                                  

                                                    
                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                    

                                                      
                                                        
                                                        Download this table
                                                      
                                                    

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
Plot

                                                  

                                                    
                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                    

                                    

                                      

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                            

                                              
                                              
                                              
                                            

                                          

                                        

                                        

                                          

                                            

                                          

                                        

                                      

                                      

                                        

                                          

                                        

                                      

                                      

                                        

                                        

                                          

                                            

                                              

                                                Select one gene below
                                              

                                            

                                            

                                              

                                            

                                            

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                Select cohorts below
                                              

                                            

                                            

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Results and Plots

                                    

                                    

                                      

                                        
                                        

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                

                                                  This takes time depending on how many cohorts you use and the size of each cohort.
Note: When using all the TCGA, it takes ~30 sec. Please be patient.
                                                

                                              

                                            

                                            

                                              

                                                

                                                  Plot
                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                                  
                                                  

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                            

                                              

                                                
Table

                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                

                                                  This takes time depending on how many cohorts you use and the size of each cohort.
Note: When using all the TCGA, it takes ~2 min. Please be patient.
                                                

                                              

                                            

                                            

                                              

                                                

                                                  Plot
                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              

                                

                                  
Cacner Gene Census (COSMIC)

                                

                                

                                  

                                    

                                      We are using the Cancer Gene Census from COSMIC. 

                              Please enter gene names below or select a gene set.

                              If the genes are associated with cancer predisposition, they will appear in the table. Otherwise, the entire database will be displayed.
                                    

                                    

                                      

                                    

                                    

                                      

                                        

                                          

                                            
Inputs and Settings

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                    

                                      

                                        

                                          

                                            
Result Table

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                                  
                                                  Download this table
                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                            

                              

                                

                                  
Registered cohort

                                  

                                    
                                  

                                

                                

                                  

                                  

                                    

                                      
                                    

                                    

                                      
                                    

                                    

                                      

                                    

                                  

                                

                              

                            

                            

                              

                                

                                  
Upload

                                  

                                    
                                  

                                

                                

                                  

                                  

                                    

                                      

                                    

                                    

                                      

                                    

                                    

                                      

                                        
                                      

                                    

                                  

                                  

                                    

                                      

                                    

                                    

                                      

                                    

                                  

                                  

                                    

                                      
                                    

                                  

                                  

                                    

                                      

                                    

                                  

                                  

                                    

                                      

                                    

                                    

                                      

                                        
                                        
                                      

                                    

                                    

                                      

                                        
                                        
                                      

                                    

                                  

                                  

                                    

                                      
                                    

                                    

                                      

                                    

                                  

                                  

                                    

                                      

                                    

                                  

                                  

                                    

                                      
Previews

                                    

                                    

                                      

                                        
                                        

                                          

                                            

                                              

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

              

              

                
scRNA

                

                  

                    

                      
Dataset selection

                      

                        
                      

                    

                    

                      

                        

                          

                        

                        

                          
Dataset detail:

                          
                        

                      

                    

                  

                

                

                  

                    

                      
Data Overview & Analysis

                      

                        
                      

                    

                    

                      

                        
                        

                          

                            

                            

                              

                                

                                  

                                    

                                      
Plot

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Setting

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                      

                                      

                                        

                                          

                                            

                                              
                                              
                                              
                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                                

                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  
                                                  
                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              
                              

                                

                                  

                                  

                                    

                                      

                                        

                                          

                                            
Inputs and Settings

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                              

                                                
Select a gene below:

                                              

                                              

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                    

                                      

                                        

                                          

                                            
Plot

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                  

                                    

                                      

                                        

                                          

                                            
Inputs and Settings

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                

                                                  This takes 1~3 minutes depending on the size of the input genes and the size of the scRNA dataset. Please be patient.
                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                    

                                      

                                        

                                          

                                            
Plots

                                            

                                              
                                            

                                          

                                          

                                            

                                              
                                              

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                  

                                                

                                                

                                                  

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                    

                                                      

                                                    

                                                    

                                                      
                                                    

                                                    

                                                      
                                                    

                                                    

                                                      

                                                        

                                                          
                                                          
                                                          
                                                        

                                                      

                                                    

                                                    

                                                      

                                                        
Select the groups to use in the violin plot below:

                                                      

                                                      

                                                        

                                                      

                                                    

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                              
                              

                                

                                  

                                  

                                    

                                      

                                        

                                          

                                            
Inputs and Settings

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                

                                              

                                              

                                                

                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                    

                                      

                                        

                                          

                                            
Plot

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                  

                                    

                                      

                                        

                                          

                                            
Inputs and Settings

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                                  Select a gene below:
                                                

                                              

                                              

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                    

                                      

                                        

                                          

                                            
Plot

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  
Select the groups to use in the violin plot below:

                                                

                                                

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                  

                                    

                                      

                                        

                                          

                                            
Inputs and Settings

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                

                                              

                                              

                                                

                                                  

                                                    
                                                    
                                                    
                                                  

                                                

                                              

                                              

                                                

                                                  

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                              

                                              

                                                

                                                  Select a gene below:
                                                

                                              

                                              

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                    

                                      

                                        

                                          

                                            
Plot

                                            

                                              
                                            

                                          

                                          

                                            

                                              

                                                

                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

              

              

                
 Epigenome Visualisation

                

                  

                    

                      
IGV

                    

                    

                      

                        
                        

                          

                            

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          

                                            List of imported dataset:
                                          

                                        

                                        

                                          The following samples are used for the profile plot.
                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                            Enter the coordinates below:
                                          

                                        

                                        

                                          Please write the genome locus in the format of 'chr:start-end' line by line. 
For example, 'chr1:1000000-2000000'.
                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                      

                                      

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Profile Plot

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          

                                            
                                            

                                              
                                              
                                            

                                          

                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                            Selected datasets:
                                          

                                        

                                        

                                          The following datasets are used for the genome visualisation.
                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plot

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              
                                              
                                            

                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              
                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          Note: 

                              1. When using BAM files, a wide range (e.g., >100k–200k bp) can cause a memory error and stop the interface (This issue does not occur when using only BigWig files.) 

                              2. If the sample label is missing, try increasing the height of the figure and re-plotting.
                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                        

                                          Visualised by the Gviz library. Version:  1.50.0
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              
                                              
                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                            
                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                            

                                              
Selected dataset detail:

                                            

                                            

                                              

                                            

                                          

                                          

                                            

                                            

                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plot

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            

                                              This tool calculates the correlation between RNA-seq gene expression and ATAC-seq peak intensity for a specified gene across matched samples.
                                            

                                            

                                              

                                            

                                            

                                              

                                            

                                            

                                              

                                                

                                                  

                                                

                                                

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              The column names of the RNAseq data:
                                            

                                            

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              

                                                

                                                  

                                                

                                                

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              The column names of the ATACseq data:
                                            

                                            

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              
 

                                            

                                            

                                              Below, enter matching sample names from the RNA-seq and ATAC-seq tables. 

                                  One pair per line, separated by a comma. At least 3 pairs are required. 

                                  

                                  Example: 

                                  	Sample1_RNA_Rep1,Sample1_ATAC_Rep1
                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              

                                                
                                                

                                                  
                                                  
                                                

                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                            

                                          

                                          

                                            

                                              

                                                

                                                  
                                                  
                                                  
                                                

                                              

                                            

                                            

                                              Note: If this is NOT checked, it takes very long time to calculate the correlation.
                                            

                                            

                                              

                                            

                                            

                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        

                                          
Results

                                          

                                            
                                          

                                        

                                        

                                          

                                            
                                            

                                              

                                                

                                                

                                                  

                                                    

                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                              

                                                

                                                

                                                  

                                                    

                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                              

                                                

                                                

                                                  

                                                    

                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
Show the potential enhancer/promoter list

                                          

                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                                

                                                  

                                                

                                                

                                                  

                                                    
                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                                

                                                  

                                                

                                                

                                                  

                                                

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                          

                            

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          This tool scans for motifs in the input peaks or sequences with the MotifDb database (PWMLogn.hg19.MotifDb.Hsap), identifying potential transcription factor binding sites within the specified genomic region.
                                        

                                        

                                          

                                            
                                            

                                              
                                              
                                            

                                          

                                        

                                        

                                          

                                            

                                              
                                              
                                            

                                          

                                          

                                            

                                              
                                              

                                                
                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              
                                              
                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      

                                        

                                          
Motifs

                                          

                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              
                                            

                                            

                                              
                                                
                                                Download motif table
                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                

                                

                                  

                                    

                                      

                                        

                                          
Plot (logo)

                                          

                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                            

                                              
                                            

                                            

                                              
                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

              

              

                
 Tools

                

                  
                  

                    

                      

                        

                          

                            
Convert Huamns genes with Mouse genes

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Conversion Table

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
List of converted genes

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
Convert Ensemble gene ids with Gene symbols

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                      

                                      

                                        

                                          

                                            
                                            
                                          

                                        

                                      

                                      

                                      

                                        

                                          

                                        

                                      

                                      

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Conversion Table

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
List of converted genes

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
Find the genomic loci

                          

                          

                            

                              

                                

                                  

                                    

                                      
Inputs and Settings

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Search results

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
List of genes/coordinates

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
Cross-tabulation analysis

                          

                          

                            

                              

                                

                                  

                                    

                                      

                                        

                                          
Table contents

                                          

                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                                Group Names
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                Values
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                                
                                                
                                              

                                            

                                            

                                              

                                            

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
2x2 Table

                                          

                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                            

                                          

                                          

                                            

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                  

                                    

                                      

                                        

                                          
Statistic test

                                          

                                            
                                          

                                        

                                        

                                          

                                            

                                              

                                                
                                                

                                                  

                                                    
                                                  

                                                  

                                                    
                                                  

                                                

                                              

                                            

                                            

                                              

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plot

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
Venn Diagram

                          

                          

                            

                              

                                

                                  

                                    

                                      
Information of each group

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              

                                                
                                              

                                              

                                                
                                              

                                            

                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                            
                                            
                                          

                                        

                                        

                                          

                                            

                                              
                                              
                                            

                                          

                                          

                                            

                                              
                                              
                                            

                                          

                                        

                                      

                                      

                                      

                                        

                                          
Show the overlapping elements

                                        

                                        

                                          

                                            

                                              
                                              

                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                          

                                        

                                        

                                          

                                            

                                              
                                              

                                                
                                                
                                              

                                            

                                          

                                          

                                            

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plot

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
Network plot

                          

                          

                            

                              

                                

                                  

                                    

                                      
Input

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                            
                                            

                                              
                                              
                                            

                                            

                                              

                                            

                                          

                                        

                                        

                                          

                                            

                                              
                                              
                                              
                                            

                                          

                                        

                                      

                                      

                                        

                                          
The input data table

                                        

                                        

                                          

                                        

                                        

                                          

                                        

                                      

                                    

                                  

                                

                              

                              

                                

                                  

                                    

                                      
Plot

                                      

                                        
                                      

                                    

                                    

                                      

                                        

                                          

                                        

                                        

                                          
                                        

                                        

                                          

                                        

                                        

                                          
                                        

                                      

                                    

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                

              

              

                

                  

                    

                    

                    

                      The wiki for OmicsBridge is available at 
                      
                        this link
                      .
                    

                  

                  

                

                

                  

                    
 

                  

                  

                    

                      

                        

                          Session Info
                        

                      

                      

                        
                      

                      

                        

                      

                      

                        

                      

                    

                  

                  

                    
 

                  

                

              

            

            

              
Last updated on 23. July, 2025